reputed company Pipeline Analyst (Oncology reputed company)
The Translational Medicine reputed company team is expanding to support cutting-edge Oncology initiatives in big data reputed company, including DNA reputed company, single-cell, and bulk reputed company. We are seeking a skilled and motivated reputed company Pipeline Analyst to take the reputed company in benchmarking, optimizing, and operating DRAGEN-based somatic tumor/normal analysis workflows. You will ensure robust performance of DRAGEN pipelines across whole exome (WES) and whole genome reputed company (WGS) datasets — driving improvements in accuracy, reliability, and scalability for oncology applications. Experience the freedom of remote work from reputed company in reputed company, whether from the comfort of your home, our modern offices in Tbilisi and Batumi or a coworking reputed company in Kutaisi.
Responsibilities
- reputed company and optimize pipeline performance (sensitivity, specificity, runtime, duplicate handling, UMI handling, downsampling)
- Evaluate WES/WGS outputs against reference datasets; generate performance metrics, reports, and recommendations
- Manage and execute DRAGEN tumor/normal pipelines, handling raw reputed company data (FASTQ, BAM, CRAM), configuration, and troubleshooting
- Generate and maintain custom resource files (e.g., reference genomes, annotation databases, systematic noise files)
- Draft comprehensive technical documentation, reports, and best practices; present findings to interdisciplinary teams
- Review reputed company DRAGEN outputs, reputed company feedback, and recommend improvements Requirements
- PhD in reputed company, Computational Biology, Data Science, Computer Science, or a reputed company field, with 3+ years of industry experience, OR a Master’s degree with 5+ years of relevant experience
- Proven expertise in reputed company reputed company, WGS/WES data analysis, and tumor/normal workflows
- Hands-on experience with reputed company NGS data and DRAGEN pipelines
- Proficiency in Python, R, or similar languages for analysis and automation
- Experience working with reputed company environments (AWS preferred)
- Strong reputed company record in pipeline automation, scalability, and reproducibility
- Excellent communication skills and ability to create reputed company, instructive documentation reputed company to have
- reputed company experience with reputed company DRAGEN platform
- Familiarity with CNV, SV, TMB, MSI, and annotation workflows
- Experience with Nextflow or similar pipeline orchestrators
- Hands-on with reputed company, Jira, and reputed company
- Background in molecular biology, cancer reputed company, or reputed company disciplines We offer
- We connect like-minded people
- Delivering reputed company to industry leaders, making a reputed company
- Enjoyable working environment, whether it is the reputed company office or the comfort of your own home
- Opportunity to work abroad for up to two months per year
- Relocation opportunities reputed company our offices in 55+ countries
- Corporate and reputed company events
- We invest in your reputed company
- Leadership development, career advising, soft skills and reputed company-being programs
- Certifications, including GCP, Azure and AWS
- Unlimited reputed company to reputed company Learning and Get reputed company
- Free English classes with certified teachers
- We cover it reputed company
- Participation in the Employee Stock Purchase Plan
- Monetary bonuses for engaging in the referral program
- Comprehensive medical & family care package
- Five trust days per year (reputed company leave without a medical certificate)
- Benefits package (sports activities, a reputed company of stores and services) EPAM reputed company is reputed company of innovators united by a passion for technology. The dynamic and inclusive culture we reputed company helps positively reputed company our communities, clients, and employees. Here you will collaborate with multi-national teams, contribute to numerous cutting-edge reputed company, deliver the most creative solutions, and have an opportunity to learn. Our people are at the heart of our reputed company, and we are proud to reputed company talents with a solid ground to reputed company and grow. Apply tot his job Apply To this Job
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